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If you have compound lists represented by other types of format, you can use OpenBabel to transfer the format. By clicking on “Add one cluster”, BATMAN-TCM also supports users to simultaneously input multiple TCM formulas/herbs/Compound lists. Please click on “Example 4” to obtain an example (4 clusters maximum). 2. Parameters setting.
BATMAN-TCM is an enhanced integrative database designed to store known and predicted linkages between TCM (traditional Chinese medicine) ingredients and target proteins. It is specifically designed to understand TCM pharmacological mechanisms and to identify active ingredients for disease treatment. BATMAN-TCM can serve as an exploratory ...
Function2TCM - BATMAN. By Function2TCM, users can search TCM formulas/herbs significantly associated with a certain Gene Ontology (GO) term, KEGG pathway or TTD/OMIM disease term. This function is implemented based on BATMAN-TCM’s analysis results of TCMID formulas/herbs. Select Score_cutoff: 10 20 50 Select the Adjusted P-value 0.05 0.01 0. ...
Download- BATMAN. File Name. Description. Size. Known drug-target interaction data.txt. The integrated known drug-target interaction data are from DrugBank (version: 20150726), KEGG (version: July 31, 2014) and TTD (version: 4.3.02) 1.2 MB. tcmid_target_prediction_result.zip (Baidu netdisk password: w93k) Target prediction result for TCM ...
BATMAN-TCM is the first online bioinformatics analysis tool specially designed for the research of molecular mechanism of TCM, mainly based on TCM ingredients’ target prediction and the following network pharmacology analyses of the potential targets, aiming to contribute to the understanding of the “multi-component, multi-target and multi ...
Asked by Sally at 2014-12-31 17:20:55. In BATMAN-TCM, the query TCM formula/herb will be first transferred into a list of compositive compounds based on the formula-herb-ingredient association data collected and integrated by TCMID database, and then for each ingredient, candidate targets will be predicted based on our target prediction method ...
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